SNP Profiles of PA 107   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
1._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
2._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
3._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
4._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
12._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
13._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
14._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
15._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
16._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
17._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
18._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
21._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
23._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
24._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
25._PA_107_[PER]
CCAGCGTTTTCCTT_CCCCAAAGCCAA
26._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
27._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCC_
28._PA_107_[PER]
CCAGCGTTTTCCTTTTCC_AAAGCCAA
29._GC-02-001-1-01
CCAGCGTTTTCCTTTTCC_AAAGCCAA
30._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
31._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
32._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
33._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
34._GC-02-001-1-01
CCAGCGTTTTCCTT_CCCCAAAGCCAA
35._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
36._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCC_
37._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
38._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
39._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
40._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
41._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
42._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
43._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
44._RUQ_1728
__CG____TT_CC_AG_AA
45._RUQ_1728
GGAGCGAAAACCAAAA__AAAGGGAA
46._MITC-000340
GGAGCGAAAACCAAAA__AAAGGGAA
 1516171819202122232425262728
_Input profile
CTAACGCCGGGGGGCTCCCGTTCTAAGG
1._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
2._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
3._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
4._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
5._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
6._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
7._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
8._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
9._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
10._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
11._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
12._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
13._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
14._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
15._GC-08-111-3-10
CTAACGCCGGGGGGCTCCCGTTCTAAGG
16._GC-08-111-3-10
CTAACGCCGGGGGGCTCCCGTTCTAAGG
17._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
18._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
19._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
20._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
21._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
22._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
23._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
24._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
25._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
26._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
27._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
28._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
29._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
30._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
31._GC-08-111-3-10
CTAACGCCGGGGGGCTCCCGTTCTAAGG
32._GC-08-111-3-10
CTAACGCCGGGGGGCTCCCGTTCTAAGG
33._GC-08-111-3-10
CTAACGCCGGGGGGCTCCCGTTCTAAGG
34._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
35._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
36._GC-02-001-1-01
CTAACGCCGGGGGGCTCCCGTTCTAAGG
37._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
38._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
39._PA_107_[PER]
CTAACGCCGGGGGGCTCCCGTTCTAAGG
40._PA_107_[PER]
CTATCGCCGGGGGGCTCCCGTTCTAAGG
41._GC-08-111-3-10
CTATCGCCGGGGGGCTCCCGTTCTAAGG
42._PA_107_[PER]
CTAACGCCGGGGAACTCCCGTTCTAAGG
43._PA_107_[PER]
CTAACGCCGGGGAACTCCCGTTCTAAGG
44._RUQ_1728
____GGGGAA_CCCG__AA_
45._RUQ_1728
AGAACGGGCCCC_AGCCCGAA_AA_
46._MITC-000340
AGAACGGGCCCC_AGCCCGAA_AA_
 2930313233343536373839   
_Input profile
GGAACCAGCCAACTGTACATGGX_XX_XX_X
1._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
2._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
3._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
4._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
5._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
6._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
7._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
8._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
9._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
10._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
11._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
12._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
13._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
14._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
15._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
16._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
17._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
18._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
19._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
20._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
21._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
22._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
23._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
24._PA_107_[PER]
GGAACCAGCCAACT_ACATGGX_XX_XX_X
25._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
26._PA_107_[PER]
GGAACCAGCCAA_GTACATGGX_XX_XX_X
27._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
28._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
29._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
30._GC-02-001-1-01
GGAACCAGCCAACT_ACATGGX_XX_XX_X
31._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
32._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
33._GC-08-111-3-10
GGAACCAGCCAA_GTACATGGX_XX_XX_X
34._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
35._GC-02-001-1-01
GGAACCAGCCAA_GTACATGGX_XX_XX_X
36._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
37._PA_107_[PER]
GGAACCAGCCAA_GTACATGGX_XX_XX_X
38._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
39._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
40._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
41._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
42._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
43._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
44._RUQ_1728
___AG____AC__X_XX_XX_X
45._RUQ_1728
GGAAGGAGGGACAGACACATGGX_XX_XX_X
46._MITC-000340
GGAAGGAGGGACAGACACATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

29._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

31._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

32._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

33._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

34._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

38._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

39._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

40._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

92.3 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

45._PA_107_[PER] RUQ_1728

51.5 %
34 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

51.5 %
34 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25